Publications
2012年以降(原著論文393報)
(1)
Muratsu, A., Ikeda, M., Shimizu, K., Kameoka, S., Motooka, D.., Nakamura, S.., Matsumoto, H., Ogura, H., Shimazu, T. Dynamic Change of Fecal Microbiota and Metabolomics in a Polymicrobial Murine Sepsis Model. Acute Med Surg 2022, 9 (1), e770. https://doi.org/10.1002/ams2.770.
(2)
Naito, M., Nakanishi, Y., Motomura, Y., Takamatsu, H., Koyama, S., Nishide, M., Naito, Y., Izumi, M., Mizuno, Y., Yamaguchi, Y., Nojima, S., Okuzaki, D.., Kumanogoh, A. Semaphorin 6D-Expressing Mesenchymal Cells Regulate IL-10 Production by ILC2s in the Lung. Life Sci Alliance 2022, 5 (11), e202201486. https://doi.org/10.26508/lsa.202201486.
(3)
Togami, Y., Matsumoto, H., Yoshimura, J., Matsubara, T., Ebihara, T., Matsuura, H., Mitsuyama, Y., Kojima, T., Ishikawa, M., Sugihara, F., Hirata, H., Okuzaki, D.., Ogura, H. Significance of Interferon Signaling Based on MRNA-MicroRNA Integration and Plasma Protein Analyses in Critically Ill COVID-19 Patients. Mol Ther Nucleic Acids 2022, 29, 343–353. https://doi.org/10.1016/j.omtn.2022.07.005.
(4)
Tachino, J., Matsumoto, H., Sugihara, F., Seno, S., Okuzaki, D.., Kitamura, T., Komukai, S., Kido, Y., Kojima, T., Togami, Y., Katayama, Y., Nakagawa, Y., Ogura, H. Development of Clinical Phenotypes and Biological Profiles via Proteomic Analysis of Trauma Patients. Crit Care 2022, 26 (1), 241. https://doi.org/10.1186/s13054-022-04103-z.
(5)
Namkoong, H., Edahiro, R., Takano, T., Nishihara, H., Shirai, Y., Sonehara, K., Tanaka, H., Azekawa, S., Mikami, Y., Lee, H., Hasegawa, T., Okudela, K., Okuzaki, D.., Motooka, D.., Kanai, M., Naito, T., Yamamoto, K., Wang, Q. S., Saiki, R., Ishihara, R., Matsubara, Y., Hamamoto, J., Hayashi, H., Yoshimura, Y., Tachikawa, N., Yanagita, E., Hyugaji, T., Shimizu, E., Katayama, K., Kato, Y., Morita, T., Takahashi, K., Harada, N., Naito, T., Hiki, M., Matsushita, Y., Takagi, H., Aoki, R., Nakamura, A., Harada, S., Sasano, H., Kabata, H., Masaki, K., Kamata, H., Ikemura, S., Chubachi, S., Okamori, S., Terai, H., Morita, A., Asakura, T., Sasaki, J., Morisaki, H., Uwamino, Y., Nanki, K., Uchida, S., Uno, S., Nishimura, T., Ishiguro, T., Isono, T., Shibata, S., Matsui, Y., Hosoda, C., Takano, K., Nishida, T., Kobayashi, Y., Takaku, Y., Takayanagi, N., Ueda, S., Tada, A., Miyawaki, M., Yamamoto, M., Yoshida, E., Hayashi, R., Nagasaka, T., Arai, S., Kaneko, Y., Sasaki, K., Tagaya, E., Kawana, M., Arimura, K., Takahashi, K., Anzai, T., Ito, S., Endo, A., Uchimura, Y., Miyazaki, Y., Honda, T., Tateishi, T., Tohda, S., Ichimura, N., Sonobe, K., Sassa, C. T., Nakajima, J., Nakano, Y., Nakajima, Y., Anan, R., Arai, R., Kurihara, Y., Harada, Y., Nishio, K., Ueda, T., Azuma, M., Saito, R., Sado, T., Miyazaki, Y., Sato, R., Haruta, Y., Nagasaki, T., Yasui, Y., Hasegawa, Y., Mutoh, Y., Kimura, T., Sato, T., Takei, R., Hagimoto, S., Noguchi, Y., Yamano, Y., Sasano, H., Ota, S., Nakamori, Y., Yoshiya, K., Saito, F., Yoshihara, T., Wada, D., Iwamura, H., Kanayama, S., Maruyama, S., Yoshiyama, T., Ohta, K., Kokuto, H., Ogata, H., Tanaka, Y., Arakawa, K., Shimoda, M., Osawa, T., Tateno, H., Hase, I., Yoshida, S., Suzuki, S., Kawada, M., Horinouchi, H., Saito, F., Mitamura, K., Hagihara, M., Ochi, J., Uchida, T., Baba, R., Arai, D., Ogura, T., Takahashi, H., Hagiwara, S., Nagao, G., Konishi, S., Nakachi, I., Murakami, K., Yamada, M., Sugiura, H., Sano, H., Matsumoto, S., Kimura, N., Ono, Y., Baba, H., Suzuki, Y., Nakayama, S., Masuzawa, K., Namba, S., Suzuki, K., Naito, Y., Liu, Y.-C., Takuwa, A., Sugihara, F., Wing, J. B., Sakakibara, S., Hizawa, N., Shiroyama, T., Miyawaki, S., Kawamura, Y., Nakayama, A., Matsuo, H., Maeda, Y., Nii, T., Noda, Y., Niitsu, T., Adachi, Y., Enomoto, T., Amiya, S., Hara, R., Yamaguchi, Y., Murakami, T., Kuge, T., Matsumoto, K., Yamamoto, Y., Yamamoto, M., Yoneda, M., Kishikawa, T., Yamada, S., Kawabata, S., Kijima, N., Takagaki, M., Sasa, N., Ueno, Y., Suzuki, M., Takemoto, N., Eguchi, H., Fukusumi, T., Imai, T., Fukushima, M., Kishima, H., Inohara, H., Tomono, K., Kato, K., Takahashi, M., Matsuda, F., Hirata, H., Takeda, Y., Koh, H., Manabe, T., Funatsu, Y., Ito, F., Fukui, T., Shinozuka, K., Kohashi, S., Miyazaki, M., Shoko, T., Kojima, M., Adachi, T., Ishikawa, M., Takahashi, K., Inoue, T., Hirano, T., Kobayashi, K., Takaoka, H., Watanabe, K., Miyazawa, N., Kimura, Y., Sado, R., Sugimoto, H., Kamiya, A., Kuwahara, N., Fujiwara, A., Matsunaga, T., Sato, Y., Okada, T., Hirai, Y., Kawashima, H., Narita, A., Niwa, K., Sekikawa, Y., Nishi, K., Nishitsuji, M., Tani, M., Suzuki, J., Nakatsumi, H., Ogura, T., Kitamura, H., Hagiwara, E., Murohashi, K., Okabayashi, H., Mochimaru, T., Nukaga, S., Satomi, R., Oyamada, Y., Mori, N., Baba, T., Fukui, Y., Odate, M., Mashimo, S., Makino, Y., Yagi, K., Hashiguchi, M., Kagyo, J., Shiomi, T., Fuke, S., Saito, H., Tsuchida, T., Fujitani, S., Takita, M., Morikawa, D., Yoshida, T., Izumo, T., Inomata, M., Kuse, N., Awano, N., Tone, M., Ito, A., Nakamura, Y., Hoshino, K., Maruyama, J., Ishikura, H., Takata, T., Odani, T., Amishima, M., Hattori, T., Shichinohe, Y., Kagaya, T., Kita, T., Ohta, K., Sakagami, S., Koshida, K., Hayashi, K., Shimizu, T., Kozu, Y., Hiranuma, H., Gon, Y., Izumi, N., Nagata, K., Ueda, K., Taki, R., Hanada, S., Kawamura, K., Ichikado, K., Nishiyama, K., Muranaka, H., Nakamura, K., Hashimoto, N., Wakahara, K., Koji, S., Omote, N., Ando, A., Kodama, N., Kaneyama, Y., Maeda, S., Kuraki, T., Matsumoto, T., Yokote, K., Nakada, T.-A., Abe, R., Oshima, T., Shimada, T., Harada, M., Takahashi, T., Ono, H., Sakurai, T., Shibusawa, T., Kimizuka, Y., Kawana, A., Sano, T., Watanabe, C., Suematsu, R., Sageshima, H., Yoshifuji, A., Ito, K., Takahashi, S., Ishioka, K., Nakamura, M., Masuda, M., Wakabayashi, A., Watanabe, H., Ueda, S., Nishikawa, M., Chihara, Y., Takeuchi, M., Onoi, K., Shinozuka, J., Sueyoshi, A., Nagasaki, Y., Okamoto, M., Ishihara, S., Shimo, M., Tokunaga, Y., Kusaka, Y., Ohba, T., Isogai, S., Ogawa, A., Inoue, T., Fukuyama, S., Eriguchi, Y., Yonekawa, A., Kan-O, K., Matsumoto, K., Kanaoka, K., Ihara, S., Komuta, K., Inoue, Y., Chiba, S., Yamagata, K., Hiramatsu, Y., Kai, H., Asano, K., Oguma, T., Ito, Y., Hashimoto, S., Yamasaki, M., Kasamatsu, Y., Komase, Y., Hida, N., Tsuburai, T., Oyama, B., Takada, M., Kanda, H., Kitagawa, Y., Fukuta, T., Miyake, T., Yoshida, S., Ogura, S., Abe, S., Kono, Y., Togashi, Y., Takoi, H., Kikuchi, R., Ogawa, S., Ogata, T., Ishihara, S., Kanehiro, A., Ozaki, S., Fuchimoto, Y., Wada, S., Fujimoto, N., Nishiyama, K., Terashima, M., Beppu, S., Yoshida, K., Narumoto, O., Nagai, H., Ooshima, N., Motegi, M., Umeda, A., Miyagawa, K., Shimada, H., Endo, M., Ohira, Y., Watanabe, M., Inoue, S., Igarashi, A., Sato, M., Sagara, H., Tanaka, A., Ohta, S., Kimura, T., Shibata, Y., Tanino, Y., Nikaido, T., Minemura, H., Sato, Y., Yamada, Y., Hashino, T., Shinoki, M., Iwagoe, H., Takahashi, H., Fujii, K., Kishi, H., Kanai, M., Imamura, T., Yamashita, T., Yatomi, M., Maeno, T., Hayashi, S., Takahashi, M., Kuramochi, M., Kamimaki, I., Tominaga, Y., Ishii, T., Utsugi, M., Ono, A., Tanaka, T., Kashiwada, T., Fujita, K., Saito, Y., Seike, M., Watanabe, H., Matsuse, H., Kodaka, N., Nakano, C., Oshio, T., Hirouchi, T., Makino, S., Egi, M., Biobank Japan Project, Omae, Y., Nannya, Y., Ueno, T., Katayama, K., Ai, M., Fukui, Y., Kumanogoh, A., Sato, T., Hasegawa, N., Tokunaga, K., Ishii, M., Koike, R., Kitagawa, Y., Kimura, A., Imoto, S., Miyano, S., Ogawa, S., Kanai, T., Fukunaga, K., Okada, Y. DOCK2 Is Involved in the Host Genetics and Biology of Severe COVID-19. Nature 2022. https://doi.org/10.1038/s41586-022-05163-5.
(6)
Kosai-Fujimoto, Y., Itoh, S., Yugawa, K., Fukuhara, T., Okuzaki, D.., Toshima, T., Harada, N., Oda, Y., Yoshizumi, T., Mori, M. Impact of JMJD6 on Intrahepatic Cholangiocarcinoma. Mol Clin Oncol 2022, 17 (2), 131. https://doi.org/10.3892/mco.2022.2564.
(7)
Chijimatsu, R., Kobayashi, S., Takeda, Y., Kitakaze, M., Tatekawa, S., Arao, Y., Nakayama, M., Tachibana, N., Saito, T., Ennishi, D., Tomida, S., Sasaki, K., Yamada, D., Tomimaru, Y., Takahashi, H., Okuzaki, D.., Motooka, D.., Ohshiro, T., Taniguchi, M., Suzuki, Y., Ogawa, K., Mori, M., Doki, Y., Eguchi, H., Ishii, H. Establishment of a Reference Single-Cell RNA Sequencing Dataset for Human Pancreatic Adenocarcinoma. iScience 2022, 25 (8), 104659. https://doi.org/10.1016/j.isci.2022.104659.
(8)
Abe, R., Akeda, Y., Takeuchi, D., Sakamoto, N., Sugawara, Y., Yamamoto, N., Kerdsin, A., Matsumoto, Y.., Motooka, D.., Leolerd, W., Santanirand, P., Suzuki, M., Shibayama, K., Tomono, K., Iida, T., Hamada, S. Clonal Dissemination of Carbapenem-Resistant Klebsiella Pneumoniae ST16 Co-Producing NDM-1 and OXA-232 in Thailand. JAC Antimicrob Resist 2022, 4 (4), dlac084. https://doi.org/10.1093/jacamr/dlac084.
(9)
Yasumizu, Y., Ohkura, N., Murata, H., Kinoshita, M., Funaki, S., Nojima, S., Kido, K., Kohara, M., Motooka, D.., Okuzaki, D.., Suganami, S., Takeuchi, E., Nakamura, Y., Takeshima, Y., Arai, M., Tada, S., Okumura, M., Morii, E., Shintani, Y., Sakaguchi, S., Okuno, T., Mochizuki, H. Myasthenia Gravis-Specific Aberrant Neuromuscular Gene Expression by Medullary Thymic Epithelial Cells in Thymoma. Nat Commun 2022, 13 (1), 4230. https://doi.org/10.1038/s41467-022-31951-8.
(10)
Otake-Kasamoto, Y., Kayama, H., Kishikawa, T., Shinzaki, S., Tashiro, T., Amano, T., Tani, M., Yoshihara, T., Li, B., Tani, H., Liu, L., Hayashi, A., Okuzaki, D.., Motooka, D.., Nakamura, S.., Okada, Y., Iijima, H., Takeda, K., Takehara, T. Lysophosphatidylserines Derived from Microbiota in Crohn’s Disease Elicit Pathological Th1 Response. J Exp Med 2022, 219 (7), e20211291. https://doi.org/10.1084/jem.20211291.
(11)
Tomiyama, T., Yamamoto, T., Takahama, S., Toshima, T., Itoh, S., Harada, N., Shimokawa, M., Okuzaki, D.., Mori, M., Yoshizumi, T. Up-Regulated LRRN2 Expression as a Marker for Graft Quality in Living Donor Liver Transplantation. Hepatol Commun 2022. https://doi.org/10.1002/hep4.2033.
(12)
Matsumae, T., Kodama, T., Myojin, Y., Maesaka, K., Sakamori, R., Takuwa, A., Oku, K., Motooka, D.., Sawai, Y., Oshita, M., Nakabori, T., Ohkawa, K., Miyazaki, M., Tanaka, S., Mita, E., Tawara, S., Yakushijin, T., Nozaki, Y., Hagiwara, H., Tahata, Y., Yamada, R., Hikita, H., Tatsumi, T., Takehara, T. Circulating Cell-Free DNA Profiling Predicts the Therapeutic Outcome in Advanced Hepatocellular Carcinoma Patients Treated with Combination Immunotherapy. Cancers (Basel) 2022, 14 (14), 3367. https://doi.org/10.3390/cancers14143367.
(13)
Kawai, H., Osawa, Y., Matsuda, M., Tsunoda, T., Yanagida, K., Hishikawa, D., Okawara, M., Sakamoto, Y., Shimagaki, T., Tsutsui, Y., Yoshida, Y., Yoshikawa, S., Hashi, K., Doi, H., Mori, T., Yamazoe, T., Yoshio, S., Sugiyama, M., Okuzaki, D.., Komatsu, H., Inui, A., Tamura-Nakano, M., Oyama, C., Shindou, H., Kusano, H., Kage, M., Ikegami, T., Yanaga, K., Kanto, T. Sphingosine-1-Phosphate Promotes Tumor Development and Liver Fibrosis in Mouse Model of Congestive Hepatopathy. Hepatology 2022, 76 (1), 112–125. https://doi.org/10.1002/hep.32256.
(14)
Chaya, T., Maeda, Y., Sugimura, R., Okuzaki, D.., Watanabe, S., Varner, L. R., Motooka, D.., Gyoten, D., Yamamoto, H., Kato, H., Furukawa, T. Multiple Knockout Mouse and Embryonic Stem Cell Models Reveal the Role of MiR-124a in Neuronal Maturation. J Biol Chem 2022, 298 (9), 102293. https://doi.org/10.1016/j.jbc.2022.102293.
(15)
Ouji, Y., Misu, M., Kitamura, T., Okuzaki, D.., Yoshikawa, M. Impaired Differentiation Potential of CD34-Positive Cells Derived from Mouse Hair Follicles after Long-Term Culture. Sci Rep 2022, 12 (1), 11011. https://doi.org/10.1038/s41598-022-15354-9.
(16)
Watanabe, S., Minagawa, M., Shinoda, T., Motooka, D.., Tohya, M., Kirikae, T., Nakamura, S.., Saiura, A. Bile Collected From the Normal Gallbladder of Patients During Surgery Has Simple Bacterial Flora. Cureus 2022, 14 (6), e25681. https://doi.org/10.7759/cureus.25681.
(17)
Tatekawa, S., Tamari, K., Chijimatsu, R., Konno, M., Motooka, D.., Mitsufuji, S., Akita, H., Kobayashi, S., Murakumo, Y., Doki, Y., Eguchi, H., Ishii, H., Ogawa, K. N(6)-Methyladenosine Methylation-Regulated Polo-like Kinase 1 Cell Cycle Homeostasis as a Potential Target of Radiotherapy in Pancreatic Adenocarcinoma. Sci Rep 2022, 12 (1), 11074. https://doi.org/10.1038/s41598-022-15196-5.
(18)
Maeda, Y., Motooka, D.., Kawasaki, T., Oki, H., Noda, Y., Adachi, Y., Niitsu, T., Okamoto, S., Tanaka, K., Fukushima, K., Amiya, S., Hara, R., Oguro-Igashira, E., Matsuki, T., Hirata, H., Takeda, Y., Kida, H., Kumanogoh, A., Nakamura, S.., Takeda, K. Longitudinal Alterations of the Gut Mycobiota and Microbiota on COVID-19 Severity. BMC Infect Dis 2022, 22 (1), 572. https://doi.org/10.1186/s12879-022-07358-7.
(19)
Masuhiro, K., Tamiya, M., Fujimoto, K., Koyama, S., Naito, Y., Osa, A., Hirai, T., Suzuki, H., Okamoto, N., Shiroyama, T., Nishino, K., Adachi, Y., Nii, T., Kinugasa-Katayama, Y., Kajihara, A., Morita, T., Imoto, S., Uematsu, S., Irie, T., Okuzaki, D.., Aoshi, T., Takeda, Y., Kumagai, T., Hirashima, T., Kumanogoh, A. Bronchoalveolar Lavage Fluid Reveals Factors Contributing to the Efficacy of PD-1 Blockade in Lung Cancer. JCI Insight 2022, 7 (9), e157915. https://doi.org/10.1172/jci.insight.157915.
(20)
Sano, E., Suzuki, T., Hashimoto, R., Itoh, Y., Sakamoto, A., Sakai, Y., Saito, A., Okuzaki, D.., Motooka, D.., Muramoto, Y., Noda, T., Takasaki, T., Sakuragi, J.-I., Minami, S., Kobayashi, T., Yamamoto, T., Matsumura, Y., Nagao, M., Okamoto, T., Takayama, K. Cell Response Analysis in SARS-CoV-2 Infected Bronchial Organoids. Commun Biol 2022, 5 (1), 516. https://doi.org/10.1038/s42003-022-03499-2.
(21)
Murata, H., Kinoshita, M., Yasumizu, Y., Motooka, D.., Beppu, S., Shiraishi, N., Sugiyama, Y., Kihara, K., Tada, S., Koda, T., Konaka, H., Takamatsu, H., Kumanogoh, A., Okuno, T., Mochizuki, H. Cell-Free DNA Derived From Neutrophils Triggers Type 1 Interferon Signature in Neuromyelitis Optica Spectrum Disorder. Neurol Neuroimmunol Neuroinflamm 2022, 9 (3), e1149. https://doi.org/10.1212/NXI.0000000000001149.
(22)
Murai, K., Kodama, T., Hikita, H., Shimoda, A., Fukuoka, M., Fukutomi, K., Shigeno, S., Shiode, Y., Motooka, D.., Higuchi, Y., Miyakawa, K., Suemizu, H., Ryo, A., Tahata, Y., Makino, Y., Yamada, R., Sakamori, R., Tatsumi, T., Takehara, T. Inhibition of Nonhomologous End Joining-Mediated DNA Repair Enhances Anti-HBV CRISPR Therapy. Hepatol Commun 2022. https://doi.org/10.1002/hep4.2014.
(23)
Murai, H., Kodama, T., Maesaka, K., Tange, S., Motooka, D.., Suzuki, Y., Shigematsu, Y., Inamura, K., Mise, Y., Saiura, A., Ono, Y., Takahashi, Y., Kawasaki, Y., Iino, S., Kobayashi, S., Idogawa, M., Tokino, T., Hashidate-Yoshida, T., Shindou, H., Miyazaki, M., Imai, Y., Tanaka, S., Mita, E., Ohkawa, K., Hikita, H., Sakamori, R., Tatsumi, T., Eguchi, H., Morii, E., Takehara, T. Multiomics Identifies the Link between Intratumor Steatosis and the Exhausted Tumor Immune Microenvironment in Hepatocellular Carcinoma. Hepatology 2022. https://doi.org/10.1002/hep.32573.
(24)
Jingushi, K., Kawashima, A., Saito, T., Kanazawa, T., Motooka, D.., Kimura, T., Mita, M., Yamamoto, A., Uemura, T., Yamamichi, G., Okada, K., Tomiyama, E., Koh, Y., Matsushita, M., Kato, T., Hatano, K., Uemura, M., Tsujikawa, K., Wada, H., Nonomura, N. Circulating Extracellular Vesicles Carrying Firmicutes Reflective of the Local Immune Status May Predict Clinical Response to Pembrolizumab in Urothelial Carcinoma Patients. Cancer Immunol Immunother 2022. https://doi.org/10.1007/s00262-022-03213-5.
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Hori, Y., Hirose, K., Ozeki, M., Hata, K., Motooka, D.., Tahara, S., Matsui, T., Kohara, M., Higashihara, H., Ono, Y., Tanaka, K., Toyosawa, S., Morii, E. Correction: PIK3CA Mutation Correlates with MTOR Pathway Expression but Not Clinical and Pathological Features in Fibro-Adipose Vascular Anomaly (FAVA). Diagn Pathol 2022, 17 (1), 43. https://doi.org/10.1186/s13000-022-01224-5.
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Abe, Y., Fukushima, K., Matsumoto, Y.., Niitsu, T., Nabeshima, H., Nagahama, Y., Akiba, E., Haduki, K., Saito, H., Nitta, T., Kawano, A., Tanaka, M., Matsuki, T., Motooka, D.., Tsujino, K., Miki, K., Nakamura, S.., Iida, T., Kida, H. Mycobacterium Senriense Sp. Nov., a Slowly Growing, Non-Scotochromogenic Species, Isolated from Sputum of an Elderly Man. Int J Syst Evol Microbiol 2022, 72 (5). https://doi.org/10.1099/ijsem.0.005378.
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Yamaguchi, T., Iijima, H., Yoshihara, T., Tani, M., Otake, Y., Iwatani, S., Amano, T., Tashiro, T., Kurahashi, T., Inoue, T., Tsujii, Y., Hayashi, Y., Inoue, T., Motooka, D.., Nakamura, S.., Shinzaki, S., Takehara, T. Exacerbation of Non-Steroidal Anti-Inflammatory Drug-Induced Enteropathy in C-C Chemokine Receptor Type 7-Deficient Mice. J Gastroenterol Hepatol 2022. https://doi.org/10.1111/jgh.15868.
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Takeuchi, D., Kerdsin, A., Akeda, Y., Sugawara, Y., Sakamoto, N., Matsumoto, Y.., Motooka, D.., Ishihara, T., Nishi, I., Laolerd, W., Santanirand, P., Yamamoto, N., Tomono, K., Hamada, S. Nationwide Surveillance in Thailand Revealed Genotype-Dependent Dissemination of Carbapenem-Resistant Enterobacterales. Microb Genom 2022, 8 (4). https://doi.org/10.1099/mgen.0.000797.
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Pareek, S., Sanchenkova, X., Sakaguchi, T., Murakami, M., Okumura, R., Kayama, H., Kawauchi, S., Motooka, D.., Nakamura, S.., Okuzaki, D.., Kishimoto, T., Takeda, K. Epithelial MiR-215 Negatively Modulates Th17-Dominant Inflammation by Inhibiting CXCL12 Production in the Small Intestine. Genes Cells 2022, 27 (4), 243–253. https://doi.org/10.1111/gtc.12922.
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Matsushita, M., Fujita, K., Hatano, K., Hayashi, T., Kayama, H., Motooka, D.., Hase, H., Yamamoto, A., Uemura, T., Yamamichi, G., Tomiyama, E., Koh, Y., Kato, T., Kawashima, A., Uemura, M., Nojima, S., Imamura, R., Mubeen, A., Netto, G. J., Tsujikawa, K., Nakamura, S.., Takeda, K., Morii, E., Nonomura, N. High-Fat Diet Promotes Prostate Cancer Growth through Histamine Signaling. Int J Cancer 2022. https://doi.org/10.1002/ijc.34028.
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Kitahara, M., Shigeno, Y., Shime, M., Matsumoto, Y.., Nakamura, S.., Motooka, D.., Fukuoka, S., Nishikawa, H., Benno, Y. Corrigendum: Vescimonas Gen. Nov., Vescimonas Coprocola Sp. Nov., Vescimonas Fastidiosa Sp. Nov., Pusillimonas Gen. Nov. and Pusillimonas Faecalis Sp. Nov. Isolated from Human Faeces. Int J Syst Evol Microbiol 2022, 72 (4). https://doi.org/10.1099/ijsem.0.005317.
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Ikemura, N., Taminishi, S., Inaba, T., Arimori, T., Motooka, D.., Katoh, K., Kirita, Y., Higuchi, Y., Li, S., Suzuki, T., Itoh, Y., Ozaki, Y., Nakamura, S.., Matoba, S., Standley, D. M., Okamoto, T., Takagi, J., Hoshino, A. An Engineered ACE2 Decoy Neutralizes the SARS-CoV-2 Omicron Variant and Confers Protection against Infection in Vivo. Sci Transl Med 2022, eabn7737. https://doi.org/10.1126/scitranslmed.abn7737.
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Ueda, K., Kawahara, K., Kimoto, N., Yamaguchi, Y., Yamada, K., Oki, H., Yoshida, T., Matsuda, S., Matsumoto, Y.., Motooka, D.., Kawatsu, K., Iida, T., Nakamura, S.., Ohkubo, T., Yonogi, S. Analysis of the Complete Genome Sequences of Clostridium Perfringens Strains Harbouring the Binary Enterotoxin BEC Gene and Comparative Genomics of PCP13-like Family Plasmids. BMC Genomics 2022, 23 (1), 226. https://doi.org/10.1186/s12864-022-08453-4.
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Kimura, T., Hayama, Y., Okuzaki, D.., Nada, S., Okada, M. The Ragulator Complex Serves as a Substrate-Specific MTORC1 Scaffold in Regulating the Nuclear Translocation of Transcription Factor EB. J Biol Chem 2022, 298 (3), 101744. https://doi.org/10.1016/j.jbc.2022.101744.
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Munakata, S., Tohya, M., Matsuzawa, H., Tsuchiya, Y., Amemiya, K., Hagiwara, T., Motooka, D.., Nakamura, S.., Sakamoto, K., Watanabe, S. Analysis of Appendectomy Samples Identified Dysbiosis in Acute Appendicitis. Biosci Microbiota Food Health 2021, 40 (2), 92–97. https://doi.org/10.12938/bmfh.2020-051.
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Harada, T., Motooka, D.., Nakamura, S.., Yamamoto, Y., Yamaguchi, T., Kawahara, R., Kawatsu, K. Detection of Genetic Elements Carrying VanA in Vancomycin-Resistant Enterococcus Saigonensis VE80T Isolated from Retail Chicken Meat. Foodborne Pathog Dis 2020, 17 (12), 772–774. https://doi.org/10.1089/fpd.2020.2827.
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Shinzawa, N., Nishi, T., Hiyoshi, F., Motooka, D.., Yuda, M., Iwanaga, S. Improvement of CRISPR/Cas9 System by Transfecting Cas9-Expressing Plasmodium Berghei with Linear Donor Template. Commun Biol 2020, 3 (1), 426. https://doi.org/10.1038/s42003-020-01138-2.
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Tone, M., Tahara, S., Nojima, S., Motooka, D.., Okuzaki, D.., Morii, E. HTR3A Is Correlated with Unfavorable Histology and Promotes Proliferation through ERK Phosphorylation in Lung Adenocarcinoma. Cancer Sci. 2020. https://doi.org/10.1111/cas.14592.
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Shimizu, K., Takahashi, A., Motooka, D.., Nakamura, S.., Tomono, K., Ogura, H., Shimazu, T. Fecal Gram Staining of Phagocytosed Bacteria to Differentiate Methicillin-Resistant Staphylococcus Aureus: A Case Report. J. Infect. Chemother. 2020. https://doi.org/10.1016/j.jiac.2020.05.021.
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Yoshinami, T., Kagara, N., Motooka, D.., Nakamura, S.., Miyake, T., Tanei, T., Naoi, Y., Shimoda, M., Shimazu, K., Kim, S. J., Noguchi, S. Detection of CtDNA with Personalized Molecular Barcode NGS and Its Clinical Significance in Patients with Early Breast Cancer. Transl Oncol 2020, 13 (8), 100787. https://doi.org/10.1016/j.tranon.2020.100787.
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Nagasawa, M., Tomimatsu, K., Terada, K., Kondo, K., Miyazaki, K., Miyazaki, M., Motooka, D.., Okuzaki, D.., Yoshida, T., Kageyama, S., Kawamoto, H., Kawauchi, A., Agata, Y. Long Non-Coding RNA MANCR Is a Target of BET Bromodomain Protein BRD4 and Plays a Critical Role in Cellular Migration and Invasion Abilities of Prostate Cancer. Biochem. Biophys. Res. Commun. 2020, 526 (1), 128–134. https://doi.org/10.1016/j.bbrc.2020.03.043.
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Kusakabe, S., Fukushima, K., Yokota, T., Hino, A., Fujita, J., Motooka, D.., Nakamura, S.., Shibayama, H., Kanakura, Y. Enterococcus: A Predictor of Ravaged Microbiota and Poor Prognosis after Allogeneic Hematopoietic Stem Cell Transplantation. Biol. Blood Marrow Transplant. 2020, 26 (5), 1028–1033. https://doi.org/10.1016/j.bbmt.2020.01.019.
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Koike, Y., Kuwatsuka, S., Nishimoto, K., Motooka, D.., Murota, H. Skin Mycobiome of Psoriasis Patients Is Retained during Treatment with TNF and IL-17 Inhibitors. Int J Mol Sci 2020, 21 (11). https://doi.org/10.3390/ijms21113892.
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Mohsin, M., Tanaka, K., Kawahara, R., Kondo, S., Noguchi, H., Motooka, D.., Nakamura, S.., Khong, D. T., Nguyen, T. N., Hoang, T. N., Yamamoto, Y. Whole-Genome Sequencing and Comparative Analysis of the Genomes of Bacteroides Thetaiotaomicron and Escherichia Coli Isolated from a Healthy Resident in Vietnam. J Glob Antimicrob Resist 2020, 21, 65–67. https://doi.org/10.1016/j.jgar.2020.02.034.
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Masunaga, N., Kagara, N., Motooka, D.., Nakamura, S.., Miyake, T., Tanei, T., Naoi, Y., Shimoda, M., Shimazu, K., Kim, S. J., Noguchi, S. Molecular Barcode Sequencing of the Whole Ligand Binding Domain of the ESR1 Gene in Cell-Free DNA from Patients with Metastatic Breast Cancer. Transl Oncol 2020, 13 (3), 100735. https://doi.org/10.1016/j.tranon.2019.12.007.
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Ikeda, A., Ogino, T., Kayama, H., Okuzaki, D.., Nishimura, J., Fujino, S., Miyoshi, N., Takahashi, H., Uemura, M., Matsuda, C., Yamamoto, H., Takeda, K., Mizushima, T., Mori, M., Doki, Y. Human NKp44+ Group 3 Innate Lymphoid Cells Associate with Tumor-Associated Tertiary Lymphoid Structures in Colorectal Cancer. Cancer Immunol Res 2020. https://doi.org/10.1158/2326-6066.CIR-19-0775.
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Hiramatsu, Y., Suzuki, K., Motooka, D.., Nakamura, S.., Horiguchi, Y. Expression of Small RNAs of Bordetella Pertussis Colonizing Murine Tracheas. Microbiol. Immunol. 2020. https://doi.org/10.1111/1348-0421.12791.
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Tachibana, S.-I., Matsuzaki, S., Tanaka, M., Shiota, M., Motooka, D.., Nakamura, S.., Goto, S. G. The Autophagy-Related Protein GABARAP Is Induced during Overwintering in the Bean Bug (Hemiptera: Alydidae). J. Econ. Entomol. 2020, 113 (1), 427–434. https://doi.org/10.1093/jee/toz287.
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Al Kadi, M., Jung, N., Ito, S., Kameoka, S., Hishida, T., Motooka, D.., Nakamura, S.., Iida, T., Okuzaki, D.. UNAGI: An Automated Pipeline for Nanopore Full-Length CDNA Sequencing Uncovers Novel Transcripts and Isoforms in Yeast. Funct. Integr. Genomics 2020. https://doi.org/10.1007/s10142-020-00732-1.
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Umeda, K., Nakamura, H., Fukuda, A., Yamaguchi, T., Matsumoto, Y.., Motooka, D.., Nakamura, S.., Kawahara, R. Molecular Characterization of BlaKHM-1 Encoding Plasmid in an Enterobacter Hormaechei Subsp. Hoffmannii Isolate from Blood Culture. PLoS ONE 2020, 15 (1), e0227605. https://doi.org/10.1371/journal.pone.0227605.
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Morimatsu, M., Yamashita, E., Seno, S., Sudo, T., Kikuta, J., Mizuno, H., Okuzaki, D.., Motooka, D.., Ishii, M. Migration Arrest of Chemoresistant Leukemia Cells Mediated by MRTF-SRF Pathway. Inflamm Regen 2020, 40, 15. https://doi.org/10.1186/s41232-020-00127-6.
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Monira, S., Nakamura, S.., Gotoh, K., Izutsu, K., Watanabe, H., Alam, N. H., Nakaya, T., Horii, T., Ali, Sk. I., Iida, T., Alam, M. Metagenomic Profile of Gut Microbiota in Children during Cholera and Recovery. Gut Pathogens 2013, 5 (1). https://doi.org/10.1186/1757-4749-5-1.
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Kaihatsu, K., Sawada, S., Nakamura, S.., Nakaya, T., Yasunaga, T., Kato, N. Sequence-Specific and Visual Identification of the Influenza Virus NS Gene by Azobenzene-Tethered Bis-Peptide Nucleic Acid. PLoS ONE 2013, 8 (5). https://doi.org/10.1371/journal.pone.0064017.
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Ideno, S., Sakai, K., Yunoki, M., Kubota-Koketsu, R., Inoue, Y., Nakamura, S.., Yasunaga, T., Okuno, Y., Ikuta, K. Immunization of Rabbits with Synthetic Peptides Derived from a Highly Conserved β-Sheet Epitope Region underneath the Receptor Binding Site of Influenza A Virus. Biologics: Targets and Therapy 2013, 7 (1), 233–241. https://doi.org/10.2147/BTT.S50870.
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Garcia, G. D., Gregoracci, G. B., Santos, E. O., Meirelles, P. M., Silva, G. G. Z., Edwards, R., Sawabe, T., Gotoh, K., Nakamura, S.., Iida, T., de Moura, R. L., Thompson, F. L. Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia Braziliensis Corals. Microbial Ecology 2013, 65 (4), 1076–1086. https://doi.org/10.1007/s00248-012-0161-4.
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Kawahara, K., Nemoto, N., Motooka, D.., Nishi, Y., Doi, M., Uchiyama, S., Nakazawa, T., Nishiuchi, Y., Yoshida, T., Ohkubo, T., Kobayashi, Y. Polymorphism of Collagen Triple Helix Revealed by 19F NMR of Model Peptide [Pro-4(R)-Hydroxyprolyl-Gly]3-[Pro-4(R)-Fluoroprolyl-Gly]-[Pro-4(R)-Hydroxyprolyl-Gly]3. J Phys Chem B 2012, 116 (23), 6908–6915. https://doi.org/10.1021/jp212631q.
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de Silva, U. C., Tanaka, H., Nakamura, S.., Goto, N., Yasunaga, T. A Comprehensive Analysis of Reassortment in Influenza A Virus. Biol Open 2012, 1 (4), 385–390. https://doi.org/10.1242/bio.2012281.
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Yasugi, M., Nakamura, S.., Daidoji, T., Kawashita, N., Ramadhany, R., Yang, C.-S., Yasunaga, T., Iida, T., Horii, T., Ikuta, K., Takahashi, K., Nakaya, T. Frequency of D222G and Q223R Hemagglutinin Mutants of Pandemic (H1N1) 2009 Influenza Virus in Japan between 2009 and 2010. PLoS ONE 2012, 7 (2), e30946. https://doi.org/10.1371/journal.pone.0030946.
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Tamaki, H., Zhang, R., Angly, F. E., Nakamura, S.., Hong, P.-Y., Yasunaga, T., Kamagata, Y., Liu, W.-T. Metagenomic Analysis of DNA Viruses in a Wastewater Treatment Plant in Tropical Climate. Environmental Microbiology 2012, 14 (2), 441–452. https://doi.org/10.1111/j.1462-2920.2011.02630.x.
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Tachibana, S.-I., Sullivan, S. A., Kawai, S., Nakamura, S.., Kim, H. R., Goto, N., Arisue, N., Palacpac, N. M. Q., Honma, H., Yagi, M., Tougan, T., Katakai, Y., Kaneko, O., Mita, T., Kita, K., Yasutomi, Y., Sutton, P. L., Shakhbatyan, R., Horii, T., Yasunaga, T., Barnwell, J. W., Escalante, A. A., Carlton, J. M., Tanabe, K. Plasmodium Cynomolgi Genome Sequences Provide Insight into Plasmodium Vivax and the Monkey Malaria Clade. Nature Genetics 2012, 44 (9), 1051–1055. https://doi.org/10.1038/ng.2375.
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Ramadhany, R., Yasugi, M., Nakamura, S.., Daidoji, T., Watanabe, Y., Takahashi, K., Ikuta, K., Nakaya, T. Tropism of Pandemic 2009 H1N1 Influenza A Virus. Frontiers in Microbiology 2012, 3 (APR). https://doi.org/10.3389/fmicb.2012.00128.
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Motooka, D.., Kawahara, K., Nakamura, S.., Doi, M., Nishi, Y., Nishiuchi, Y., Kang, Y. K., Nakazawa, T., Uchiyama, S., Yoshida, T., Ohkubo, T., Kobayashi, Y. The Triple Helical Structure and Stability of Collagen Model Peptide with 4(S)-Hydroxyprolyl-Pro-Gly Units. Biopolymers 2012, 98 (2), 111–121. https://doi.org/10.1002/bip.21730.
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Fukakusa, S., Kawahara, K., Nakamura, S.., Iwashita, T., Baba, S., Nishimura, M., Kobayashi, Y., Honda, T., Iida, T., Taniguchi, T., Ohkubo, T. Structure of the CFA/III Major Pilin Subunit CofA from Human Enterotoxigenic Escherichia Coli Determined at 0.90 Å Resolution by Sulfur-SAD Phasing. Acta Crystallographica Section D: Biological Crystallography 2012, 68 (10), 1418–1429. https://doi.org/10.1107/S0907444912034464.
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Oneyama, C., Ikeda, J., Okuzaki, D.., Suzuki, K., Kanou, T., Shintani, Y., Morii, E., Okumura, M., Aozasa, K., Okada, M. MicroRNA-Mediated Downregulation of MTOR/FGFR3 Controls Tumor Growth Induced by Src-Related Oncogenic Pathways. Oncogene 2011, 30 (32), 3489–3501. https://doi.org/10.1038/onc.2011.63.
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Okuzaki, D.., Kimura, S., Yabuta, N., Ohmine, T., Nojima, H. LeukoCatch, a Quick and Efficient Tool for the Preparation of Leukocyte Extracts from Blood. BMC Clin Pathol 2011, 11, 9. https://doi.org/10.1186/1472-6890-11-9.
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Noda, M., Uchiyama, S., McKay, A. R., Morimoto, A., Misawa, S., Yoshida, A., Shimahara, H., Takinowaki, H., Nakamura, S.., Kobayashi, Y., Matsunaga, S., Ohkubo, T., Robinson, C. V., Fukui, K. Assembly States of the Nucleosome Assembly Protein 1 (NAP-1) Revealed by Sedimentation Velocity and Non-Denaturing MS. Biochem. J. 2011, 436 (1), 101–112. https://doi.org/10.1042/BJ20102063.
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Honda, T., Fujino, K., Okuzaki, D.., Ohtaki, N., Matsumoto, Y.., Horie, M., Daito, T., Itoh, M., Tomonaga, K. Upregulation of Insulin-like Growth Factor Binding Protein 3 in Astrocytes of Transgenic Mice That Express Borna Disease Virus Phosphoprotein. J. Virol. 2011, 85 (9), 4567–4571. https://doi.org/10.1128/JVI.01817-10.
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Nakaya, T., Nakamura, S.., Okamoto, Y., Nagai, Y., Kawai, J., Hayashizaki, Y., Iida, T., Horii, T. Direct Metagenomic Detection of Viral Pathogens in Human Specimens Using an Unbiased High-Throughput Sequencing Approach. In Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, 2011, pp 73–80. https://doi.org/10.1002/9781118010549.ch8.
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Nakamura, S.., Nakaya, T., Iida, T. Metagenomic Analysis of Bacterial Infections by Means of High-Throughput DNA Sequencing. Experimental Biology and Medicine 2011, 236 (8), 968–971. https://doi.org/10.1258/ebm.2011.010378.
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Monira, S., Nakamura, S.., Gotoh, K., Izutsu, K., Watanabe, H., Alam, N. H., Endtz, H. P., Cravioto, A., Ali, S. I., Nakaya, T., Horii, T., Iida, T., Alam, M. Gut Microbiota of Healthy and Malnourished Children in Bangladesh. Frontiers in Microbiology 2011, 2 (NOV). https://doi.org/10.3389/fmicb.2011.00228.
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Kerdsin, A., Dejsirilert, S., Puangpatra, P., Sripakdee, S., Chumla, K., Boonkerd, N., Polwichai, P., Tanimura, S., Takeuchi, D., Nakayama, T., Nakamura, S.., Akeda, Y., Gottschalk, M., Sawanpanyalert, P., Oishi, K. Genotypic Profile of Streptococcus Suis Serotype 2 and Clinical Features of Infection in Humans, Thailand. Emerging Infectious Diseases 2011, 17 (5), 835–842. https://doi.org/10.3201/eid1705.100754.
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Iwatani, H., Iio, K., Nagasawa, Y., Yamamoto, R., Horii, A., Okuzaki, D.., Inohara, H., Nojima, H., Imai, E., Rakugi, H., Isaka, Y. Microarray Analysis of Tonsils of IgA Nephropathy Patients. Adv. Otorhinolaryngol. 2011, 72, 75–78. https://doi.org/10.1159/000324611.
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Tougan, T., Kasama, T., Ohtaka, A., Okuzaki, D.., Saito, T. T., Russell, P., Nojima, H. The Mek1 Phosphorylation Cascade Plays a Role in Meiotic Recombination of Schizosaccharomyces Pombe. Cell Cycle 2010, 9 (23), 4688–4702. https://doi.org/10.4161/cc.9.23.14050.
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Okuzaki, D.., Fukushima, T., Tougan, T., Ishii, T., Kobayashi, S., Yoshizaki, K., Akita, T., Nojima, H. GenopalTM: A Novel Hollow Fibre Array for Focused Microarray Analysis. DNA Res. 2010, 17 (6), 369–379. https://doi.org/10.1093/dnares/dsq025.
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Funato, Y., Terabayashi, T., Sakamoto, R., Okuzaki, D.., Ichise, H., Nojima, H., Yoshida, N., Miki, H. Nucleoredoxin Sustains Wnt/β-Catenin Signaling by Retaining a Pool of Inactive Dishevelled Protein. Curr. Biol. 2010, 20 (21), 1945–1952. https://doi.org/10.1016/j.cub.2010.09.065.
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Okuzaki, D.., Kasama, T., Hirata, A., Ohtaka, A., Kakegawa, R., Nojima, H. Spo5 Phosphorylation Is Essential for Its Own Timely Degradation and for Successful Meiosis in Schizosaccharomyces Pombe. Cell Cycle 2010, 9 (18), 3751–3760.
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Kawahara, K., Nakamura, S.., Katsu, Y., Motooka, D.., Hosokawa, Y., Kojima, Y., Matsukawa, K., Takinowaki, H., Uchiyama, S., Kobayashi, Y., Fukui, K., Ohkubo, T. Cloning, Expression, Crystallization and Preliminary X-Ray Crystallographic Analysis of a Human Condensin SMC2 Hinge Domain with Short Coiled Coils. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2010, 66 (Pt 9), 1067–1070. https://doi.org/10.1107/S1744309110028721.
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Taichi, M., Yamazaki, T., Kawahara, K., Motooka, D.., Nakamura, S.., Harada, S., Teshima, T., Ohkubo, T., Kobayashi, Y., Nishiuchi, Y. Structure-Activity Relationship of Marinostatin, a Serine Protease Inhibitor Isolated from a Marine Organism. J. Pept. Sci. 2010, 16 (7), 329–336. https://doi.org/10.1002/psc.1244.
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Shigehisa, A., Okuzaki, D.., Kasama, T., Tohda, H., Hirata, A., Nojima, H. Mug28, a Meiosis-Specific Protein of Schizosaccharomyces Pombe, Regulates Spore Wall Formation. Mol. Biol. Cell 2010, 21 (12), 1955–1967. https://doi.org/10.1091/mbc.e09-12-0997.
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Iio, K., Nagasawa, Y., Iwatani, H., Yamamoto, R., Horii, A., Okuzaki, D.., Furumatsu, Y., Inohara, H., Nojima, H., Imai, E., Isaka, Y., Rakugi, H. Microarray Analysis of Tonsils in Immunoglobulin A Nephropathy Patients. Biochem. Biophys. Res. Commun. 2010, 393 (4), 565–570. https://doi.org/10.1016/j.bbrc.2010.01.120.
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Utachee, P., Nakamura, S.., Isarangkura-na-ayuthaya, P., Tokunaga, K., Sawanpanyalert, P., Ikuta, K., Auwanit, W., Kameoka, M. Two N-Linked Glycosylation Sites in the V2 and C2 Regions of Human Immunodeficiency Virus Type 1 CRF01-AE Envelope Glycoprotein Gp120 Regulate Viral Neutralization Susceptibility to the Human Monoclonal Antibody Specific for the CD4 Binding Domain. Journal of Virology 2010, 84 (9), 4311–4320. https://doi.org/10.1128/JVI.02619-09.
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Takahashi, R., Nakamura, S.., Nakazawa, T., Minoura, K., Yoshida, T., Nishi, Y., Kobayashi, Y., Ohkubo, T. Structure and Reaction Mechanism of Human Nicotinamide Phosphoribosyltransferase. Journal of Biochemistry 2010, 147 (1), 95–107. https://doi.org/10.1093/jb/mvp152.
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Kameoka, M., Isarangkura-na-ayuthaya, P., Kameoka, Y., Sapsutthipas, S., Soonthornsata, B., Nakamura, S.., Tokunaga, K., Sawanpanyalert, P., Ikuta, K., Auwanit, W. The Role of Lysine Residue at Amino Acid Position 165 of Human Immunodeficiency Virus Type 1 CRF01_AE Gag in Reducing Viral Drug Susceptibility to Protease Inhibitors. Virology 2010, 405 (1), 129–138. https://doi.org/10.1016/j.virol.2010.06.003.
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Izumi, K., Nakamura, S.., Nakano, H., Shimura, K., Sakagami, Y., Oishi, S., Uchiyama, S., Ohkubo, T., Kobayashi, Y., Fujii, N., Matsuoka, M., Kodama, E. N. Characterization of HIV-1 Resistance to a Fusion Inhibitor, N36, Derived from the Gp41 Amino-Terminal Heptad Repeat. Antiviral Research 2010, 87 (2), 179–186. https://doi.org/10.1016/j.antiviral.2010.04.011.
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Obuchi, M., Kawahara, K., Motooka, D.., Nakamura, S.., Yamanaka, M., Takeda, T., Uchiyama, S., Kobayashi, Y., Ohkubo, T., Sambongi, Y. Hyperstability and Crystal Structure of Cytochrome c(555) from Hyperthermophilic Aquifex Aeolicus. Acta Crystallogr. D Biol. Crystallogr. 2009, 65 (Pt 8), 804–813. https://doi.org/10.1107/S0907444909017314.
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Du, A., Daidoji, T., Koma, T., Ibrahim, M. S., Nakamura, S.., de Silva, U. C., Ueda, M., Yang, C.-S., Yasunaga, T., Ikuta, K., Nakaya, T. Detection of Circulating Asian H5N1 Viruses by a Newly Established Monoclonal Antibody. Biochem. Biophys. Res. Commun. 2009, 378 (2), 197–202. https://doi.org/10.1016/j.bbrc.2008.11.022.
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Utachee, P., Jinnopat, P., Isarangkura-na-ayuthaya, P., de Silva, U. C., Nakamura, S.., Siripanyaphinyo, U., Wichukchinda, N., Tokunaga, K., Yasunaga, T., Sawanpanyalert, P., Ikuta, K., Auwanit, W., Kameoka, M. Phenotypic Studies on Recombinant Human Immunodeficiency Virus Type 1 (HIV-1) Containing CRF01_AE Env Gene Derived from HIV-1-Infected Patient, Residing in Central Thailand. Microbes and Infection 2009, 11 (3), 334–343. https://doi.org/10.1016/j.micinf.2008.12.008.
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Utachee, P., Jinnopat, P., Isarangkura-Na-Ayuthaya, P., De Silva, U. C., Nakamura, S.., Siripanyaphinyo, U., Wichukchinda, N., Tokunaga, K., Yasunaga, T., Sawanpanyalert, P., Ikuta, K., Auwanit, W., Kameoka, M. Genotypic Characterization of CRF01-AE Env Genes Derived from Human Immunodeficiency Virus Type 1-Infected Patients Residing in Central Thailand. AIDS Research and Human Retroviruses 2009, 25 (2), 229–236. https://doi.org/10.1089/aid.2008.0232.
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Takahashi, T., Ohzawa, T., Sawada, S., Kato, N., Goto, N., Nakamura, S.., Yasunaga, T., Kaihatsu, K. Inhibition of Influenza Virus Infection by Targeting Genome Conserved Region with Non-Natural Nucleic Acid. Nucleic acids symposium series (2004) 2009, No. 53, 285–286. https://doi.org/10.1093/nass/nrp143.
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Sonoyama, T., Hasegawa, J., Uchiyama, S., Nakamura, S.., Kobayashi, Y., Sambongi, Y. Stability Enhancement of Cytochrome c through Heme Deprotonation and Mutations. Biophysical Chemistry 2009, 139 (1), 37–41. https://doi.org/10.1016/j.bpc.2008.09.020.
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Nishikawa, H., Nakamura, S.., Kodama, E., Ito, S., Kajiwara, K., Izumi, K., Sakagami, Y., Oishi, S., Ohkubo, T., Kobayashi, Y., Otaka, A., Fujii, N., Matsuoka, M. Electrostatically Constrained α-Helical Peptide Inhibits Replication of HIV-1 Resistant to Enfuvirtide. International Journal of Biochemistry and Cell Biology 2009, 41 (4), 891–899. https://doi.org/10.1016/j.biocel.2008.08.039.
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Nakamura, S.., Yang, C.-S., Sakon, N., Ueda, M., Tougan, T., Yamashita, A., Goto, N., Takahashi, K., Yasunaga, T., Ikuta, K., Mizutani, T., Okamoto, Y., Tagami, M., Morita, R., Maeda, N., Kawai, J., Hayashizaki, Y., Nagai, Y., Horii, T., Iida, T., Nakaya, T. Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach. PLoS ONE 2009, 4 (1), e4219. https://doi.org/10.1371/journal.pone.0004219.
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Kerdsin, A., Oishi, K., Sripakdee, S., Boonkerd, N., Polwichai, P., Nakamura, S.., Uchida, R., Sawanpanyalert, P., Dejsirilert, S. Clonal Dissemination of Human Isolates of Streptococcus Suis Serotype 14 in Thailand. Journal of Medical Microbiology 2009, 58 (11), 1508–1513. https://doi.org/10.1099/jmm.0.013656-0.
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Tougan, T., Okuzaki, D.., Nojima, H. Chum-RNA Allows Preparation of a High-Quality CDNA Library from a Single-Cell Quantity of MRNA without PCR Amplification. Nucleic Acids Res. 2008, 36 (15), e92. https://doi.org/10.1093/nar/gkn420.
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Kobayashi, S., Ito, A., Okuzaki, D.., Onda, H., Yabuta, N., Nagamori, I., Suzuki, K., Hashimoto, H., Nojima, H. Expression Profiling of PBMC-Based Diagnostic Gene Markers Isolated from Vasculitis Patients. DNA Res. 2008, 15 (4), 253–265. https://doi.org/10.1093/dnares/dsn014.
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Ohtaka, A., Okuzaki, D.., Nojima, H. Mug27 Is a Meiosis-Specific Protein Kinase That Functions in Fission Yeast Meiosis II and Sporulation. J. Cell. Sci. 2008, 121 (Pt 9), 1547–1558. https://doi.org/10.1242/jcs.022830.
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Tougan, T., Onda, H., Okuzaki, D.., Kobayashi, S., Hashimoto, H., Nojima, H. Focused Microarray Analysis of Peripheral Mononuclear Blood Cells from Churg-Strauss Syndrome Patients. DNA Res. 2008, 15 (2), 103–114. https://doi.org/10.1093/dnares/dsm035.
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Nakamura, S.., Maeda, N., Miron, I. M., Yoh, M., Izutsu, K., Kataoka, C., Honda, T., Yasunaga, T., Nakaya, T., Kawai, J., Hayashizaki, Y., Horii, T., Iida, T. Metagenomic Diagnosis of Bacterial Infections. Emerging Infectious Diseases 2008, 14 (11), 1784–1786. https://doi.org/10.3201/eid1411.080589.
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Matsumoto, S., Yoshida, T., Murata, H., Harada, S., Fujita, N., Nakamura, S.., Yamamoto, Y., Watanabe, T., Yonekura, H., Yamamoto, H., Ohkubo, T., Kobayashi, Y. Solution Structure of the Variable-Type Domain of the Receptor for Advanced Glycation End Products: New Insight into AGE-RAGE Interaction. Biochemistry 2008, 47 (47), 12299–12311. https://doi.org/10.1021/bi800910v.
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Li, S.-M., Li, G.-M., Nakamura, S.., Ikuta, K., Nakaya, T. Reduced Incorporation of SARS-CoV Spike Protein into Viral Particles Due to Amino Acid Substitutions within the Receptor Binding Domain. Japanese Journal of Infectious Diseases 2008, 61 (2), 123–127.
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Hakamada, S., Sonoyama, T., Ichiki, S.-I., Nakamura, S.., Uchiyama, S., Kobayashi, Y., Sambongi, Y. Stabilization Mechanism of Cytochrome C552 from a Moderately Thermophilic Bacterium, Hydrogenophilus Thermoluteolus. Bioscience, Biotechnology and Biochemistry 2008, 72 (8), 2103–2109. https://doi.org/10.1271/bbb.80187.
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Yabuta, N., Okada, N., Ito, A., Hosomi, T., Nishihara, S., Sasayama, Y., Fujimori, A., Okuzaki, D.., Zhao, H., Ikawa, M., Okabe, M., Nojima, H. Lats2 Is an Essential Mitotic Regulator Required for the Coordination of Cell Division. J. Biol. Chem. 2007, 282 (26), 19259–19271. https://doi.org/10.1074/jbc.M608562200.
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Ohtaka, A., Okuzaki, D.., Saito, T. T., Nojima, H. Mcp4, a Meiotic Coiled-Coil Protein, Plays a Role in F-Actin Positioning during Schizosaccharomyces Pombe Meiosis. Eukaryotic Cell 2007, 6 (6), 971–983. https://doi.org/10.1128/EC.00016-07.
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Takahashi, R., Nakamura, S.., Yoshida, T., Kobayashi, Y., Ohkubo, T. Crystallization of Human Nicotinamide Phosphoribosyltransferase. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2007, 63 (Pt 5), 375–377. https://doi.org/10.1107/S1744309107006069.
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